Re: Counting beads in 8 color FACS of mouse eye suspension

From: <rob.sutherland@utoronto.ca>
Date: Fri Apr 28 2006 - 14:27:20 EDT
Hi Susan,

I am a little confused by your indication that in order to get the  
beads on scale in the SSC parameter, the FSC is set too low to keep  
the cells on scale. FSC and SSC parameters are set separately so one  
should not affect the other.

I have used Beckman-Coulter's Flowcount and BDB Trucount beads	
extensively and the FACSCalibur needs to be set up sightly  
differently to use these products properly.  For example, by  
comparison with a Coulter XL or FC500, the FSC threshold needs to be  
lower on the BD instruments versus the Coulter ones, otherwise the  
Flowcount beads appear too small to be acquired. In the single	
platform ISHAGE protocols that are used on both instruments,  
Flowcount is detected on a plot of FSC versus time on the BD  
platform, whereas the beads are usually detected on an FL3 versus  
time plot on the Coulter platforms. The beads are generally 'off- 
scale' on the SSC parameter when the voltage is set to display	
leukocytes adequately, regardless of BD versus Coulter. I think you  
should consider using time as a parameter in your studies. These  
beads are usually found in the brightest FL1, FL2 and FL3 channels  
under 'normal' PMT settings. If you alter (lower) one of the PMTs of  
the BD instrument to see the singlet flowcount beads, you effectively  
render that channel pretty useless for the detection of anything  
else. We initially lowered to FL3 PMT on the FACScan in order to see  
the singlet beads. In sodoing, it was somewhat problematic to get  
viable (ie 7-AAD- cells) properly on scale in the same plot. Gating  
singlet beads (as one must since the assayed bead concentration is on  
the single beads) on the time versus FSC plot solved this problem  
completely.
With Trucount beads, the assayed bead concentration is on the total  
(singlets plus aggregates). However, these beads are so small that NO  
forward scatter threshold can be used. A threshold must be set on  
another parameter, and for the Trucount version of the single  
platform ISHAGE protocol, this parameter is FL1. You can identify the  
Trucount beads on an FL1 versus FL2 plot and they are so bright that  
they cluster far enough away from other events that they can be  
easily identified and gated.
HTH
Rob Sutherland
Room 11E 085
University Health Network/TGH
Toronto
Received on Mon May 1 11:38:01 2006

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