Zbigniew Darzynkiewicz wrote: >Let me add a note of caution regarding the use of pyronin Y as a marker >of proliferating cells or RNA. Both Howard [Shapiro] and Edward >[Srour] are right that a >bivariate analysis of Hoechst vs pyronin Y fluorescence allows one to >discriminate between Go vs G1 cells. Edward is also correct stating that >pyronin Y is toxic to cells. I would argue, however, that when used >supravitally pyronin Y preferentially stains mitochondria and not RNA >(see e.g. "Cytostatic and cytotoxic properties of pyronin Y: Relation to >mitochondrial localization of the dye and its interaction with RNA", >Cancer Res., 46: 5760-5766, 1986). In fact, the cytotoxic and cytostatic >properties of pyronin Y remind very much rhodamine 123 and relate to its >interaction with mitochondria. The cytotoxicity is enhanced when cells >stained with pyronin Y are illuminated with white light - e.g. under >light microscopy one can easily see that mitochondria containing pyronin >Y swell and rupture within seconds after turning on light. >Noncycling (Go) cells, have much fewer mitochondria and their >stainability with Rhodamine 123, similar as with pyronin Y, is many-fold >lower that that of G1 -S- G2M lymphocytes ("Increased mitochondrial >uptake of Rhodamine 123 during lymphocyte stimulation" Proc. Natl Acad. >Sci. USA 78: 2383-2387, 1981) > The photosensitizing effects of pyronin Y through mitochondria was >described in another publication ("Photosensitizing effect of tricyclic >heteroaromatic cationic dyes pyronin Y and toluidine blue O (Tolonium >chloride" Cancer Res., 48: 1295-1299, 1988)"). Perhaps to lower the >cytotoxicity of pyronin Y one has to carefully screen cells from the >ambient light. Rhodamine 123 may be less toxic than pyronin Y and both >discriminate Go from G1 cells. >Of course, pyronin Y and Hoechst can be used to stain differentially RNA >and DNA in fixed cells. Pyronin Y can also be used to discriminate >between ds and ssRNA ("Application of pyronin Y in cytochemistry of >nucleic acids". Cytometry, 8:138-145,1987). Zbigniew, Frank Traganos, and Tom Sharpless were kind enough to run acridine orange stains on my CCRF-CEM cells when I was generating the data for my 1981 paper on staining with Hoechst 33342 and pyronin Y, and I am mindful of both the papers on pyronin Y (PY) localization and toxicity and of the 1981 paper on rhodamine 123 (R123) uptake in stimulated lymphocytes. I would, however, opine that the question of how much of the PY fluorescence from supravitally stained cells comes from RNA and how much comes from mitochondria remains to be resolved. The R123 studies with stimulated lymphocytes were done by incubating cells with high (8-25 uM) concentrations of dye and subsequently washing the cells, more or less following the procedure originally described by Lan Bo Chen's group, which first reported mitochondrial localization of R123 (Proc Natl Acad Sci USA 77:990, 1980). At the concentrations used for cell loading, R123 (and most other fluorescent dyes) can be expected to be quenched substantially. Even if R123 uptake is Nernstian, the combination of an interior negative cytoplasmic membrane potential of tens of millivolts and a mitochondrial potential of over 100 mV will produce an intramitochondrial dye concentration in the millimolar range before the cells are washed. When washed cells are observed under the fluorescence microscope, most of the dye appears in mitochondria, which retain a much higher concentration of dye than is left elsewhere in the cell, and the results of fluorescence microscopy correlate with those obtained from flow cytometry - i.e., signals from cells with a large mass or volume of energized mitochondria are brighter than those from cells with a smaller mitochondrial mass or volume or with deenergized mitochondria, in which membrane potentials is low or absent. At lower concentrations (nanomoles to tens of nanomoles/L), permeant cationic dyes, a class which includes PY as well as R123 and the cyanines, are used for cytometric estimation of cytoplasmic membrane potential. This is most commonly done using cyanine dyes such as DiOC6(3) and DiIC1(5), but, as I showed by swapping dyes with Lan Bo Chen about 25 years ago, R123 at low concentrations, left in equilibrium with cells, can be used to study cytoplasmic membrane potential, and cyanines can be loaded into cells at high concentrations and, after washing, be used to estimate mitochondrial potential. I also established that there was not a substantial difference in DiOC6(3) fluorescence, measured by flow cytometry, between lymphoblastoid cell controls and cells treated with various agents that deenergize mitochondria. This suggests that the bulk of intramitochondrial dye is quenched, even at an external dye concentration of 50 nM, and, since one would expect the intramitochondrial concentration under this circumstances to be tens of micromoles/L, this explanation is not unreasonable. However, if one were to look at the cells under the microscope, the cytoplasmic fluorescence would bleach out in a few seconds or less, leaving fluorescence from quenched dye in mitochondria visible. The Hoechst/pyronin Y staining procedure as I orignally described it left intact, presumably viable, cells in equilibrium with 5 uM PY; Edward uses a lower concentration, 500 nM. Either would produce a sufficiently high concentration in energized mitochondria to result in substantial quenching. In the brief exposure associated with flow cytometry, one would expect a greater contribution from extramitochondrial PY, presumably including dye bound to RNA, and relatively little from intramitochondrial dye. Extramitochondrial dye would be bleached very rapidly from cells placed under the fluorescence microscope, and the impression would therefore be that dye was primarily associated with mitochondria. Under such conditions, what you see is not necessarily what you get. PY fluorescence signals from ethanol-fixed and intact cells are not vastly different in magnitude, and much (at least 75%) of PY fluorescence in fixed cells disappears after RNAse treatment. This also suggests that PY fluorescence in intact cells reflects RNA content. It would be informative to compare PY fluorescence from cells in various phases of the cell cycle (e.g., stimulated lymphocytes) in the presence and absence of mitochondrial depolarizing agents. It should also be informative to examine cells stained simultaneously with Hoechst 33342 and with Molecular Probes's newly described SYTO RNASelect. The nucleolar localization of the fluorescence of this dye in both live and fixed cells and its susceptibility to RNAse but not DNAse in fixed cells provide evidence for selective staining of intracellular RNA; weak fluorescence is also observed from mitochondria. Again, comparison of cells in the presence and absence of mitochondrial inhibitors would be informative. Hoechst 33342, R123, and PY are all sensitive to some extent to the action of efflux pumps, which affect staining of both stem cells and lymphocytes in different activation states. And I should mention that PY staining best reflects RNA content only when PY is used in combination with Hoechst 33342, 7-AAD, or another DNA-selective dye. This adds a few more worms to the can, consideration of which I will defer until next year. Happy New Year!!! -Howard -- End --Received on Thu Dec 29 10:58:00 2005
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