I am trying to set up a 9 color panel on the FACsAria. My question pertains to the staining of CCR7. Currently, we are trying to do a three step stain for this receptor using 1. pure CCR7-ms IgM 2. anti ms IgM-biotin 3. streptavidin-Quantum Dot 525 (emission is close to Alexa 430) When I run this three step CCR7 along with anti CD3-PE-Cy7 and anti CD8-Alexa 405, I get separation of CCR7 pos and neg populations but upon histogram viewing, the peaks are almost side by side and not very well separated. There's about 0.5 log difference max between the peaks. However, when I run a 3 step CCR7 with the last streptavidin step being conjugated to PE, there is good separation between the pos and neg populations with at least 1.5 log separation. Since I'm running a 9 color panel, I am a little restricted to which colors I can use. That is why I have resorted to using the Quantum Dots. Do you think that using a quantum dot that emits in the far-red region would improve the staining? I'm thinking about using a strepavidin-Quantum Dot 800. However, I still do not understand why there is such a drastic difference in the staining between the Quantum Dot 525 and the PE. Any help would be appreciated. TinaReceived on Tue Nov 1 16:58:00 2005
This archive was generated by hypermail 2.1.8 : Sat Jan 14 2006 - 22:03:57 EST