Re: dyes for 407 laser

From: William Telford <TelfordW@mail.nih.gov>
Date: Tue Feb 01 2005 - 13:51:09 EST
Hi Alice...

Cascade Blue, Alexa Fluor 405 and Pacific Blue are all far brighter than 
Alexa Fluor 430, although they emit in the blue 440-480 nm range, rather 
than the green 530 nm range of Alexa Fluor 430.  We and others have found 
Alexa Fluor 430 be relatively dim, usable only for densely expressed 
markers.  Molecular Probes may still sell Cascade Yellow, its precursor, 
but we had the same experience with this probe in the past i.e not very 
bright, and not so stable for long-term storage.  From what Molecular 
Probes has told me, generating bright violet-excited, green-emitting fluors 
is not a trivial exercise, chemically-speaking.  I recall than BD was 
attempting to use the fluorescent protein AmCyan as a violet-excited, 
green-emitting fluor, but I don't know how that is going.

But for one-color off the violet, Cascade Blue, Alexa Fluor 405 and Pacific 
Blue work OK, and are all available in protein-reactive forms, secondary 
reagents and as Zenon kits - I think Caltag now has a few Alexa Fluor 405 
direct conjugates as well.   Also, if you rearrange the filters in your 
Aria violet trigon to send Cascade Blue directly into the PMT normally used 
for Alexa Fluor 430 (with no intervening dichroic), you can boost Cascade 
Blue sensitivity quite a bit.

For more than one color off the violet - quantum dots, maybe?  ;-)

Take care,

Bill
Received on Wed Feb 2 16:58:00 2005

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