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Recent Publications from PUCL

Selected 2007 publications
Title:Subject Classification Obtained by Cluster Analysis and Principal Component Analysis Applied to Flow Cytometric Data
Author:Enrico Lugli, Marcello Pinti, Milena Nasi, Leonarda Troiano, Roberta Ferraresi, Chiara Mussi, Gianfranco Salvioli, Valeri Patsekin, J. Paul Robinson, Caterina Durante, Marina Cocchi, and Andrea Cossarizza
Publication:Cytometry Part A 71A:334–344, (2007)
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Title:A numerical recipe for accurate image reconstruction from discrete orthogonal moments
Author:Bulent Bayraktar, Tytus Bernas, J. Paul Robinson, and Bartek Rajwa
Publication:Pattern Recognition 40 659 – 669, (2007)
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Title:Semantic Analysis of Biological Imaging data: Challenges and opportunities
Author:Wamiq Manzoor Ahmed, Muhammad Naeem Ayyaz, Bartek Rajwa, Farrukh Khan, Arif Ghafoor and J. Paul Robinson
Publication:International Journal of Semantic Computing, Vol. 1:67–85, (2007)
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Title:Single- and two-photon spectral imaging of intrinsic fluorescence of transformed human hepatocytes
Author:Rajwa B, Bernas T, Acker H, Dobrucki J, Robinson JP
Publication:Microscopy Research and Technique 70:869-79, 2007
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Title:Compound jet instability in a microchannel for mononuclear compound drop formation
Author:S Y Lee, C Snider, K Park and J P Robinson
Publication:Journal of Micromechanics and Microengineering 17 (2007) 1558–1566
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Title:Bacteria-mediated delivery of nanoparticles and cargo into cells
Author:Demir Akin, Jennifer Sturgis, Kathy Ragheb, Debby Sherman, Kristin Burkholder, J. Paul. Robinson, Arun K. Bhunia, Sulma Mohammed and Rashid Bashir
Publication:Nature Nanotechnology, 2, 441 - 449 (2007)
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Title:Intracellularly grown gold nanoparticles as potential surface-enhanced Raman scattering probes
Author:Ali Shamsaie, Magdalena Jonczyk, Jennie Sturgis, J. Paul Robinson, Joseph Iradayaraj
Publication:Journal of Biomedical Optics. 12:020202-1, 2007
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Title:Precision of light intensity measurement in biological optical microscopy
Author:Bernas T, Barnes D, Asem EK, Robinson JP, Rajwa B.
Publication:Journal of Microscopy 226(Pt 2):163-74, 2007
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Title:Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species
Author:Banada PP, Guo S, Bayraktar B, Bae E, Rajwa B, Robinson JP, Hirleman ED, Bhunia AK
Publication:Biosensors and Bioelectronics 22(8):1664-71, 2007
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Title:Variation in genome size of argasid and ixodid ticks
Author:Nicholas S. Geraci, J. Spencer Johnston, J. Paul Robinson, Stephen K. Wikel, Catherine A. Hill
Publication:Insect Biochemistry and Molecular Biology 37:399–408,(2007)
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Title:Hybridoma Ped-2E9 cells cultured under modified conditions can sensitively detect Listeria monocytogenes and Bacillus cereus
Author:Pratik Banerjee, Mark T. Morgan, Jenna L. Rickus, Kathy Ragheb, Carlos Corvalan, J. Paul Robinson, Arun K. Bhunia
Publication:Applied Microbial Biotechnology (2007) 73:1423-1434
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Selected 2006 publications
Title: Optical forward-scattering for detection of Listeria monocytogenes and other Listeria species
Author: Padmapriya P. Banada, Songling Guo, Bulent Bayraktar, Euiwon Bae, Bartek Rajwa, J. Paul Robinson, E. Daniel Hirleman, Arun K. Bhunia
Publication: Biosensors and Bioelectronics 22 (2007) 1664-1671
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Title: Phi29 pRNA Vector for Efficient Escort of Hammerhead Ribozyme Targeting Survivin in Multiple Cancer Cells
Author: Hongyun Liu, Songchuan Guo, Richard Roll, Jie Li, Zhijuan Diao, Ningsheng Shao, Mark R. Riley, Alexander M. Cole, J. Paul Robinson, Nicholas Snead, Guanxin Shen, Peixuan Guo
Publication: Cancer Biology & Therapy 6:5, e1-e9 May 2007
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Title: The design and construction of a cost-efficient confocal laser scanning microscope
Author: Peng Xi, Bartlomiej Rajwa, James T. Jones, and J. Paul Robinson
Publication: American Journal of Physics 75 (3), March 2007, pages 203-207
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Title: Sol-gel derived materials as substrates for neuronal differentiation: effects of surface features and protein conformation
Author: Sabrina S. Jedlicka, Janice L. McKenzie, Silas J. Leavesley, Kenneth M. Little, Thomas J. Webster, J. Paul Robinson, David E. Nivens, and Jenna L. Rickus
Publication: Journal of Materials Chemistry, 2006, 16, 3221-3230
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Title: Compression of Fluorescence Microscopy Images Based on the Signal-to-Noise Estimation
Author: Tytus Bernas, Elikplimi K. Asem, J. Paul Robinson, and Bartek Rajwa
Publication: Microscopy Research and Technique 69:1-9, 2006
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Title: Automated classification and recognition of bacterial particles in flow by multi-angle scatter measurement and a support-vector machine classifier
Author: Bartek Rajwa, Murugesan Venkatapathi, Kathy Ragheb, Padmapriya P. Banada, E. Daniel Hirleman, Todd Lary, and J. Paul Robinson
Publication: Photonics West 20-25 January 2007 presentation
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Title: Application of quantitative morphological cytometry for evaluation of shear stress: potential for HCS systems.
Author: Bartek Rajwa, Dominik Lenz, Bulent Bayraktar, Silas Leavesley, and J. Paul Robinson
Publication: Photonics West 20-25 January 2007 presentation
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Title: Measurement and analysis of angle-resolved scatter from small particles in a cylindrical microchannel
Author: Murugesan Venkatapathi, Gerald Gregori, Kathy Ragheb, J. Paul Robinson, and E. Dan Hirleman
Publication: Applied Optics Vol. 45, No. 10, 1 April 2006, 2222-2231
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Selected 2005 publications
Title: Confocal Fluorescence Imaging of Photosensitised DNA Denaturation in Cell Nuclei
Author:Tytus Bernas, E.K.Asem, J.P.Robinson, P.R.Cook, J.W.Dobrucki
Publication:Photochemistry and Photobiology, in press
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Title: Multispectral cytometry of single bio-particles using a 32-channel detector
Author: J. Paul Robinson, Bartek Rajwa, Gerald Gregori, James Jones, and Valery Patsekin
Publication: Proc of SPIE vol. 5692, pages 359-365, 2005
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Title: AOTF-based system for image cytometry
Author: Bartek Rajwa, Wamiq Ahmed, Murugesan Venkatapathi, Gerald Gregori, Feng Jin, Jolanta Soos, Sudhir Trivedi, and J. Paul Robinson
Publication: Proc SPIE vol. 5694, pages 1-8, 2005
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Title: Integrating Cytomics and Proteomics
Author: Tytus Bernas, Gerald Gregori, Eli K. Asem, and J. Paul Robinson
Publication: Molecular & Cellular Proteomics 5.1, pages 2-13, 2006
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Title: Loss of image quality in photobleaching during microscopic imaging of fluorescent probes bound to chromatin
Author: Tytus Bernas, J. Paul Robinson, Elikplimi K. Asem, Bartek Rajwa
Publication: Journal of Biomedical Optics 10(6), 064015, November / December 2005
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Title: Mack Fulwyler in His Own Words
Author: J. Paul Robinson
Publication: Cytometry Part A 67A:61-67 (2005)
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Title: AFM/CLSM Data Visualization and Comparison Using An Open-Source Toolkit
Author: Bartek Rajwa, Helen A. Mcnally, Padma Varadharajan, Jennifer Sturgis, and J. Paul Robinson
Publication: Microscopy Research and Technique 64:176-184 (2004)
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Title: Distribution of adsorbed antigen in mono-valent and combination vaccines
Author: Garry L. Morefield, Harm HogenEsch, J. Paul Robinson, Stanley L. Hem
Publication: Vaccine 22 (2004) 1973-1984
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Title: Adaptive Image-Processing Technique and Effective Visualization of Confocal Microscopy Images
Author: Yinlong Sun, Bartek Rajwa, and J. Paul Robinson
Publication: Microscopy Research and Technique 64:156-163 (2004)
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Title: Simultaneous Mechanical Loading and Confocal Reflection Microscopy for Three-Dimensional Microbiomechanical Analysis of Biomaterials and Tissue Constructs
Author: Sherry L. Voytik-Harbin, Blayne A. Roeder, Jennifer E. Sturgis, Klod Kokini, and J. Paul Robinson
Publication: Microscopy and Microanalysis 9, 74-85, 2003
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Selected 2004 publications
Title: Multispectral Cytometry: The Next Generation
Author: J. Paul Robinson
Publication: Biophotonics International, October 2004, 36-40
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Title: Adaptive Image-Processing Technique and Effective Visualization of Confocal Microscopy Images
Author: Yinlong Sun, B.Rajwa, J.P.Robinson
Publication: Microscopy Research and Technique 64:156-163 (2004)
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Title: AFM/CLSM Data Visualization and Comparison Using An Open-Source Toolkit
Author: Bartek Rajwa, Helen A. Mcnally, Padma Varadharajan, Jennifer Sturgis, J. Paul Robinson
Publication: Microscopy Research and Technique 64:176-184 (2004)
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Title: Flow Cytometry
Author: J. Paul Robinson
Publication: Encyclopedia of Biomaterials and Biomedical Engineering, 2004, pp 630-640
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Selected 2003 publications
Title: Automated quantification and reconstruction of collagen matrix from 3D confocal datasets
Author: J. Wu, B. Rajwa, D.L.Filmer, C.M. Hoffmann, B.Yuan, C. Chiang, J. Sturgis, J.P.Robinson
Publication: Journal of Microscopy 2003, 210 Pt 2,: 158-165
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Title: Mitochondrial complex I inhibitor rotenone induces apoptosis through enhancing mitochondrial reactive oxygen species production
Author: Li N, Ragheb KE, Lawler G, Sturgis J, Rajwa B, Melendez JA, Robinson JP
Publication: J Biol Chem 2003; 278: 8516 - 8525
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Title: DPI induces mitochondrial superoxide mediated apoptosis
Author: Nianyu Li, Kathy Ragheb, Gretchen Lawler, Jennie Sturgis, Bartek Rajwa, J. Andres Melendez, and J.Paul Robinson
Publication: Free Radical Biology & Medicine, Vol. 34, No. 4, pp. 465–477, 2003
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Title: Simultaneous mechanical loading and confocal reflection microscopy for 3D micro-biomechanical analysis of biomaterials and tissue constructs.
Author: Voytik-Harbin, S.L., Roeder, B.A., Sturgis, J.E., Kokini, K., and Robinson, J.P.
Publication: Microscopy and Microanalysis 9(1):74-85. 2003.
Title: Cytometric Investigations of Phagocomes, Mitochondria and Acidic Granules in Human Neutrophils
Author: Bassoe-C-F, Nianyu Li, Kathy Ragheb, Gretchen Lawler, Jennie Sturgis, J. Paul Robinson
Publication: Cytometric Investigations of Phagosomes, Mitochondria and Acidic Granules in Human neutrophils. Cytometry 2003 Jan;51B(1):21-9
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Title: Composite surface for blocking bacterial adsorption on protein biochips.
Author: Huang TT, Sturgis J, Gomez R, Geng T, Bashir R, Bhunia AK, Robinson JP, Ladisch MR.
Publication: Biotechnol Bioeng. 2003 Mar 5;81(5):618-24..
Selected 2002 Publications
Title: Tensile mechanical properties of three-dimensional type I collagen extracellular matrices with varied microstructure.
Author: Roeder, B.A., Kokini, K., Sturgis, J.E., Robinson, J.P., and Voytik-Harbin, S.L.
Publication: J Biomech Eng 124:214-222, 2002.
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Title: The increase of reactive oxygen species and their inhibition in an isolated guinea pig spinal cord compression model.
Author: Luo,J, Li, N., Robinson, J.Paul, & Shi, R.
Publication: J Biomech Eng 124:214-222, 2002.
Title: Micromechanics of Extracellular Matrix: Three-Dimensional Microstructure Under Load.
Author:Roeder, B., Kokini, K., Sturgis, J., Robinson, J.P., and Voytik-Harbin, SL.
Publication: Advances in Bioengineering. In-press 2002.
Title: Detection of reactive oxygen species by flow cytometry after spinal chord injury.
Author:Luo, J. Li, N., Robinson, J. Paul, & Shi, R.
Publication: Journal of Neuroscience Methods 120: 105-112, 2002
Selected 2001 Publications
Title: “Microfluidic Biochip for Impendence Spectroscopy of Biological Species”
Author: Gomez, R., Bashir, R., Sarikaya, A., Ladisch, M.R., Sturgis, J., Robinson, J.P., Geng, T., Bhunia, A.K., Apple, H.L., and \Wereley, S.T.
Publication: Biomedical Microdevices 3: 201-209, 2001.
Title: CD-ROMs in the Classroom.
Author:Witham, S.A., Krockover, G.H., Compton, S.J., Cross, V.D., Eichinger, D., and Robinson, J.P.
Publication: The Science Teacher, 72-74, 2001.
Title: Adsorption of avidin on microfabricated surfaces for protein biochip applications.
Author:Bashir R, Gomez R, Sarikaya A, Ladisch MR, Sturgis J, Robinson JP.
Publication:Biotechnol Bioeng. 20;73(4):324-8, 2001.
Title: Principles of Confocal Microscopy
Author:J. Paul Robinson
Publication:Methods Cell Biol. ;63:89-105, 2001
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Title: Flow cytometric analysis of microorganisms.
Author:Sincock SA, Robinson JP.
Publication:Methods Cell Biol. ;64:511-37, 2001
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Title: Three-dimensional imaging of extracellular matrix and extracellular matrix-cell interactions.
Author:Voytik-Harbin SL, Rajwa B, Robinson JP.
Publication:Methods Cell Biol. ;63:583-97, 2001
Selected 2000 Publications
Title: Basal lamina of avian ovarian follicle: influence on morphology of granulosa cells in-vitro
Author: Elikplimi K. Asem, Shulin Feng, Susan R. Stingley-Salazar, John J. Turek, Augustine T. Peter, J. Paul Robinson
Publication: Comparative Biochemistry and Physiology Part C 125:189-201, 2000
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Title: Characterization of the interaction of Escherichia coli heat-stable enterotoxin with its putative receptor on the intestinal tract of newborn calves
Author: Ahmad M. Al-Majali, Elikplimi K. Asem , Carlton H. Lamar, J. Paul Robinson, M. James Freeman, A. Mahdi Saeed
Publication: FEMS Immunology and Medical Microbiology 28:97-104, 2000
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Title: Identification of some components of basal lamina of avian ovarian follicle
Author: E. K. Asem, S. R. Stingley-Salazar, J. P. Robinson, J. J. Turek
Publication: Poultry Science 79:589-601, 2000
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Title: Time-lapse confocal reflection microscopy of collagen fibrillogenesis and extracellular matrix assembly in vitro
Author: A. O. Brightman, B. P. Rajwa, J. E. Sturgis, M. E. McCallister, J. Paul Robinson, S. L. Voytik-Harbin
Publication: Biopolymers, Vol. 54, 222-234, 2000
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Title: White-Light Scanning Digital Microscopy
Author: J. Paul. Robinson, Ben Gravely
Publication: J. Paul Robinson & G. F. Babcock (Eds.), Emerging Tools for Single Cell Analysis: Advanced in Optical Measurement Technologies. (pp. 291-306). New York: Wiley-Liss, 2000
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Title: Inactivation Responses of Cryptosporidium parvum to UV Radiation and Gamma Radiation
Author: Heather E. Landis, John E. Thompson, J. Paul Robinson, Ernest R. Blatchley III
Publication:Preceedings of the AWWA Water Quality Technology Conference 2000, Salt Lake City, UT
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Title: Rapid purification of transfected porcine muscle cells.
Author: Blanton JR Jr, Robinson JP, Gerrard DE, Bidwell CA, Grant AL.
Publication:Methods Cell Sci.;22(2-3):217-23, 2000
Selected 1999 Publications
Title: Insulin modulates intestinal response of suckling mice to the Escherichia coli heat-stable enterotoxin
Author: Ahmad M. Al-Majali, Elikplimi K. Asem, Carlton H. Lamar, J.Paul Robinson, M. James Freeman, Mahdi Saeed
Publication: Mechanisms in the Pathogenesis of Enteric Diseases, Advances in Experimental Medicine and Biology 473:113-123, 1999
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Title: Microscope Image Processing and Analysis
Author: J. Paul Robinson, John Turek
Publication:Wiley Encyclopedia of Electrical and Electronics Engineering, Volume 13 p.p. 9-21. John G. Webster (ed) John Wiley & Sons, New York, NY, 1999
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Title: Overview of flow cytometry and microbiology.
Author: Robinson, J.P.
Publication:In Current Protocols in Cytometry. J.P. Robinson, Z. Darzynkiewicz, P.N. Dean, A. Orfao, P.S. Rabinovitch, C.C. Stewart, H.J. Tanke, and L.L. Wheeless, eds. New York, John Wiley, 1999.
Selected 1998 Publications
Title: Neutrophil-Endothelial Cell Interactions
Author: Wayne 0. Carter, J. Paul Robinson
Publication: J. P. Robinson & G. F. Babcock (Eds.). Phagocyte Function: A Guide for Research and Clinical Evaluation (pp. 253-276). New York: Wiley-Liss, 1998
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Title: Oxygen and Nitrogen Reactive Metabolites and Phagocytic Cells
Author: J. Paul Robinson
Publication:J.Paul Robinson & George Babcock Eds: Phagocyte Functions: A guide for research and Clinical Evaluation. Wiley-Liss, 1998
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Title: Small Intestinal Submucosa: A Tissue-Derived Extracellular Matrix That Promotes Tissue-Specific Growth and Differentiation of Cells in Vitro
Author: Sherry L. Voytik-Harbin, Andrew O. Brightman, Beverly Z. Waisner, J. Paul Robinson, Carlton H. Lamar
Publication:Tissue Engineering. Volume 4, Number 2. Mary Ann Liebert, Inc., 1998
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Title: Impairment of human neutrophil oxidative burst by polychlorinated biphenyls: inhibition of superoxide dismutase activity.
Author: Narayanan, P. K., Carter, W. O., Ganey, P. E., Roth, R. A., Voytik-Harbin, S. L., and Robinson, J. P.
Publication:J. Leuk. Biol., 63: 216-224, 1998.
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Selected 1997 Publications
Title: Functional Assays by Flow Cytometry
Author: J. Paul Robinson, Wayne O. Carter, And Padmakumar Narayanan
Publication: Immune cell phenotyping and flow cytometric analyisis p.p. 245-254, Manual of Clinical Laboratory Immunology (5th ed.): N. R. Rose, E. de Marcario, J. D. Folds, H. C. Lane, R. Nakumura (Eds.) Am. Soc. Microbiology, 1997
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Title: Defects in intracellular oxidative metabolism of neutrophils undergoing apoptosis.
Author: Narayanan PK, Ragheb K, Lawler G, Robinson JP.
Publication: J. Leukoc Biol 61:481-488, 1997.
Title: A primer on computers, Information Management, and Internet Access for cytometry.
Author: Robinson JP and G Valet.
Publication: Clin. Immunol. News. 17:7-13, 1997.
Selected 1994 Publications
Title: Functional Measurements Using HL-60 Cells
Author: J. Paul Robinson, Padma Kumar Narayanan, Wayne O. Carter
Publication: Z. Darzynkiewicz, J. P. Robinson, and H. Crissman (Eds.), Methods in Cell Biology, Vol 41, p.p. 423-436. Academic Press, 1994.
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Title: Oxidative Product Formation Analysis by Flow Cytometry
Author: J. P. Robinson, Wayne O. Carter, Padma Kumar Narayanan
Publication: Methods in Cell Biology, Vol 41, p.p. 461-467. Academic Press, 1994
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Title: Leucine Aminopeptidase Activity by Flow Cytometry
Author: John J. Turek, J. Paul Robinson
Publication: Methods in Cell Biology, Vol 41, p.p. 461-467. Academic Press, 1994
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Title: Intracellular Superoxide and Hydrogen Peroxide Anion detection in Endothelial cells
Author: Wayne O. Carter, Padmakumar Narayanan, and J. Paul Robinson
Publication: Journal of Leukocytel Biology, Vol 55:253-258,1994

NOTE: this paper has been cited over 300 times as a foundation paper in endothelial cell oxidative measurement

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Selected Pre-1993 Publications
Title: Flow Cytometric Analysis of Granulocytes
Author: J. Paul Robinson, Wayne O. Carter
Publication: Clinical Flow Cytometry: Principles and Application, Kenneth D. Bauer, Ricardo E. Duque, T. Vincent Shankey (Eds.), Williams and Wilkins, 1993
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Title: Flow Cytometric Analysis of Granulocytes
Author: J. Paul Robinson, Wayne O. Carter
Publication: Clinical Flow Cytometry: Principles and Application, Kenneth D. Bauer, Ricardo E. Duque, T. Vincent Shankey (Eds.), Williams and Wilkins, 1993
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